PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc005098.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 582aa    MW: 65885.2 Da    PI: 9.7659
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc005098.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR150.66.2e-16296590
                     FAR1  5 eYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwevtkle 82
                             +Y+++ GF+vr s+ k+  r+g+i +r +vCs++g +    +           + k+rr+r +tr++C a++ ++++k+gk++v+ +e
  Itr_sc005098.1_g00002.1  2 NYGRSGGFDVRHSTVKRD-RDGNISMRYLVCSRQGVKGGVGSVvplvtsdnggQAKQRRRRISTRVECVARICLRRDKTGKFVVSIFE 88
                             69***********99998.8899**************99988899*******999********************************* PP

                     FAR1 83 leHnHela 90
                             ++H+H l+
  Itr_sc005098.1_g00002.1 89 EKHTHRLC 96
                             *******8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.6E-12296IPR004330FAR1 DNA binding domain
PfamPF105511.3E-27166256IPR018289MULE transposase domain
PROSITE profilePS5096610.249410446IPR007527Zinc finger, SWIM-type
PfamPF044343.0E-4418442IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MNYGRSGGFD VRHSTVKRDR DGNISMRYLV CSRQGVKGGV GSVVPLVTSD NGGQAKQRRR  60
RISTRVECVA RICLRRDKTG KFVVSIFEEK HTHRLCSESS RQFMRINRTL DSTQQAFIAS  120
CIKANIGTSQ SFRLCKELMD EENRLARLFW ADQVAHDNFL VFGDTISFEA TYGTNRYSMV  180
FVPFTGVDNH RRCITLGAGL LIRENMESYV WLLETFKTAM GRSPLCVVTD QDPAMKIAVK  240
RVFPKSWHRF CMWHIMIKVS EKAGEYKLGD DRWFSNLYAD RMFWIPAYFL DMPMSGLLRT  300
TSRSEGENSA YGMFTHAHSC LIEFYMQFEG VLEAQRHKQT KLDAECEGSL PDFKTPLALE  360
RHVAQVFTIT IFYEIQKEII AACFFCRVVT ISEGEGLMLY VIKDEHNTVY SVQYKPTDFS  420
AACSCKLFLK MGLVCRHIIL VFKDAQLQTL PPQYVVGRWC KHTNVARCSE LAAASSSIGS  480
RINLLWGEIN TDMVKGNTAA IATLCGVSPP QTISIKPPAQ AKNKGSGKHI KSMRELAIEA  540
RARGERKCAA CGLYGRHDSR NCVIVPRVRT GKKAASKRRS KQ
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA3136228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-70FAR1-related sequence 5